Curriculum Vitae

Evolutionary biology · computational genomics · epigenetics · science communication

Education

2023–Present

PhD Candidate in Evolutionary Biology

LMU Munich & International Max Planck Research School for Biological Intelligence (IMPRS-BI), Germany · Expected completion 2027

2017–2019

MSc Molecular Biology & Plant Biotechnology

University of Crete, Greece

2013–2017

BSc Biology

University of Patras, Greece

2009–2013

BSc Biomedical Sciences, Medical Laboratories

University of West Attica, Greece

Research Experience

2023–Present

Computational epigenomics & method development

Division of Evolutionary Biology, LMU Munich · Advisor: Prof. Jochen B. W. Wolf. Development and benchmarking of computational approaches for large-scale DNA methylation datasets generated with RRBS and EM-seq, including technical-repeatability analysis, mixed models, variance partitioning, quality control, genomic annotation and HPC-based workflows.

2026–Present

Quantitative genetic modelling of epigenetic variation

LMU Munich. Integration of epigenomic, genomic, pedigree and phenotypic data to estimate heritable components of 5mC variation and distinguish different sources of molecular variation.

2023–2025

NGS experimental design & sequencing optimisation

LMU Munich. Experimental and computational planning for a large EM-seq project comprising 1,288 sequencing libraries, including coverage modelling, technical replication, batch effects, missing data and sequencing depth.

2022

Computational gene regulation & deep-learning benchmarking

DIANA Lab, University of Thessaly. Reproducible benchmarking workflows for microT-CNN and other microRNA target-prediction approaches, including canonical and non-canonical miRNA–mRNA interactions.

2021–2022

Human multi-omics & vaccine response

Biomedical Sciences Research Center “Alexander Fleming”. Transcriptomic, proteomic and clinical-data analysis of BNT162b2 vaccination responses across human cohorts.

2018–2019

Population genomics & transposable elements

FORTH, Bioinformatics and Population Genomics Group. Development of an open-source pipeline integrating transposable-element annotation, SNP variation and population-genomic data to investigate selective signals around polymorphic TE insertions in Oryza sativa.

2018

Plant molecular biology

FORTH. CRISPR/Cas9 molecular validation and functional characterisation of putative Xylella virulence factors using molecular cloning, bacterial transformation and transient-expression assays.

2016–2017

Chromosomal diversity in Mus musculus domesticus

University of Patras. Robertsonian chromosomal variation and hybrid zones studied using chromosome preparation, karyotyping and cytogenetic approaches.

Publications

2021

Population Genomics Insights into the First Wave of COVID-19

Vasilarou M, Alachiotis N, Garefalaki J, Beloukas A, Pavlidis P. Life 11(2):129. doi:10.3390/life11020129

Teaching

2023–2025

Computational Biology with Python

Graduate Teaching Assistant · LMU Munich

2022

Biology Instructor

Thalis Tutoring Center

2020

Guest Lecturer

University of West Attica

2019

Graduate Teaching Assistant

University of Crete

2014–2015

Volunteer Biology & Science Teacher

Community School Patras

Presentations

Oral presentations, seminars & invited talks
Invited
From Technical Noise to Biological Signal: Computational and Statistical Approaches for Large-Scale Epigenomic Data
van Bömmel Lab · September 2026
Oral
A Statistical Framework for DNA Methylation Repeatability in Natural Populations
SMBE 2026 · Copenhagen · July 2026
Invited
Evolution's Toolkit: How Regulatory Mechanisms and Genomic Changes Generate Diversity and Adaptation
Professorship of Population Genetics, TUM School of Life Sciences · July 2026
Retreat
From Technical Noise to Evolutionary Insight: A PhD Roadmap in Wild Bird Epigenomics
PhD thesis-plan presentation · Schneefernerhaus, Zugspitze · July 2026
Oral
Technical Repeatability of DNA Methylation in Two Wild Avian Species
EvoGen Munich · March 2026
Seminar
Methodological Considerations for DNA Methylation Studies in Natural Systems
IMPRS-BI Seminar · December 2025
Seminar
Integrating Methylation Pipelines in Nextflow: The Computational Automatization Kit
Division of Evolutionary Biology, LMU Munich · Weekly Seminar · May 2024
Oral
Epi-peTit: A Pipeline for Evaluating Methylation Sequencing and Technical Replicates
Magnificent Mini Symposium Seewiesen (MMSS) · April 2024
Language
Mein Hund
A2 German class presentation · Studienbegleitender Sprachkurs, LMU Munich · December 2023
Seminar
The Relevance of Epigenetic Variation in Natural Populations of Cyanistes caeruleus to Evolution
Division of Evolutionary Biology, LMU Munich · Weekly Seminar · July 2023
Seminar
Genomic Distribution and Evolutionary Dynamics of Polymorphic Transposable Elements in Plant Populations
DianaLab · January 2022
Invited
SARS-CoV-2 Genomics and Pathogenesis
Undergraduate Virology curriculum, University of West Attica · May 2020
Oral
Evolutionary forces in the genomic neighborhoods of polymorphic transposable elements in plant populations
Biology Department, University of Crete · October 2019
Oral
Cloning of Putative Virulence Factors of Xylella into a Transient Expression System via Agrobacterium
MSc Molecular Biology & Plant Biotechnology · IMBB-FORTH, Sarris Group · September 2018
Lab meeting
Population Genetics: Neutral Theory and Evidence of Selection
EvolabICS · Institute of Computer Science (ICS), FORTH & Department of Biology, University of Crete · June 2018
Oral
Robertsonian Chromosomal Variation of the House Mouse Mus musculus domesticus in Attica
Laboratory of Zoology, Division of Animal Biology, University of Patras · September 2017
Course talk
Ορμόνες αναπαραγωγής στους Ιχθύες
University of Patras · November 2016
Course talk
Γευματίζοντας με Νάιλον: Χιλιάδες χιλιόμετρα από τις ακτές, είδη του βυθού καταπίνουν πλαστικά
Ecology II, University of Patras · November 2016
Course talk
Συμπεριφορικές αντιδράσεις της κίσσας Aphelocoma californica στη θέα ενός νεκρού ατόμου του ίδιου είδους
Department of Biology, Division of Animal Biology, University of Patras · January 2014
Oral
Genetic Engineering: Genetically Modified T-Cells and Their Use Against Disease
BSc thesis presentation · Department of Medical Laboratories, TEI of Athens · November 2013
Course talk
Κλινική διάγνωση σηψαιμίας
Department of Medical Laboratories · Research Methodology Laboratory · Academic year 2012–2013
Posters
Poster
Investigating the Impact of Epigenetic Variation on Evolution in Wild Cyanistes caeruleus Pedigrees
16th International Congress on the Zoogeography and Ecology of Greece and Adjacent Regions (ICZEGAR) · July 2025
Poster
Evolutionary Forces in the Genomic Neighborhoods of Polymorphic Transposable Elements in Plant Populations
12th FORTH Scientific Retreat · October 2019
Poster
The Traits of Contact Zones between Different Chromosomal Races of Mus musculus domesticus in Two Robertsonian Systems of Greece
6th International Conference of Rodent Biology and Management · Potsdam, Germany · September 2018

Awards & Selected Recognition

2013

Highest-ranked candidate in competitive entrance examinations for degree holders

Department of Biology, University of Patras. Achieved the highest overall score across the three entrance examinations and was admitted to the Biology degree programme.

2026

Featured Speaker, Soapbox Science Munich

Selected to deliver an interactive public talk on evolutionary epigenetics.

2026

SMBE 2026, Symposium S22

Selected contribution on DNA methylation repeatability in natural populations.

Science Communication & Outreach

2026–Present

Pint of Science Munich

Organizer on the local team, contributing to event planning, speaker coordination, outreach and accessible public-facing science events.

2026

Soapbox Science Munich

Featured speaker. Delivered a one-hour interactive public talk on evolutionary biology, genetics, epigenetics and DNA methylation without slides.

2021–Present

R.E.A.L. Science

Science communication and public engagement activities designed to make scientific research accessible to broader audiences.

2014–Present

Science writing & digital communication

Popular science writing in Greek and English across biology, biotechnology, evolution, genetics, biodiversity, astronomy and research culture, including earlier editorial work with Ligi Epistimi na Goustaroume.

2017, 2018

Researchers’ Night Greece

Exhibitor and presenter engaging the public with biology, genetics, molecular biology and evolution.

2016

Patras Science Festival

Presenter in public-facing science communication activities for audiences with different levels of scientific background.

2014–2017

Astronomy outreach

Public observing, astronomy education, stargazing sessions and outreach activities with the Astronomy Society of Patras “Orion”.

2017

10th National Gathering of Amateur Astronomers

Event volunteer supporting organisation and public engagement at Mount Parnon.

Computational & Technical Skills

RPythonBashSLURMNextflownf-core/methylseqGit & GitHubMixed modelsBeta-binomial modellingVariance partitioningQuantitative geneticsPopulation genomicsEpigenomicsRRBSEM-seqNGS workflow benchmarking

Languages

Greek

Native

English

C2

Spanish

B2

German

B1